Super Enhancer Details

General details

Super-Enhancer ID:	SE_00514
Genomic locus:	chr10:89652035-89724495
Size/Length:	72460 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000314
Gene Symbol:	PTEN
Chromosome:	chr10
TSS:	89623194 (Transcription start site)
TES:	89731687 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00514

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000972	SE_00514	chr10	89652035	89654231	2196	265.36
C000973	SE_00514	chr10	89665000	89668509	3509	341.92
C000974	SE_00514	chr10	89674688	89680121	5433	1376.56
C000975	SE_00514	chr10	89684123	89685625	1502	128.63
C000976	SE_00514	chr10	89685905	89693457	7552	1379.7
C000977	SE_00514	chr10	89694486	89701935	7449	1687.18
C000978	SE_00514	chr10	89705015	89707443	2428	322.02
C000979	SE_00514	chr10	89707506	89709646	2140	216.14
C000980	SE_00514	chr10	89714819	89722386	7567	1114.16
C000981	SE_00514	chr10	89722478	89724495	2017	446.16