Super Enhancer Details

General details

Super-Enhancer ID:	SE_00515
Genomic locus:	chr11:95765666-95848662
Size/Length:	82996 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001243571
Gene Symbol:	MTMR2
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr11:95765666-95848662
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00515

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001379	SE_00515	chr11	95765666	95769952	4286	1342.83
C001380	SE_00515	chr11	95777262	95780718	3456	2840.74
C001381	SE_00515	chr11	95782915	95784525	1610	102.73
C001382	SE_00515	chr11	95793323	95794823	1500	108.56
C001383	SE_00515	chr11	95806819	95810888	4069	2407.52
C001384	SE_00515	chr11	95815180	95817011	1831	104.22
C001385	SE_00515	chr11	95820412	95827936	7524	2889.07
C001386	SE_00515	chr11	95829873	95833151	3278	747.01
C001387	SE_00515	chr11	95844746	95848662	3916	636.42