Super Enhancer Details

General details

Super-Enhancer ID:	SE_00519
Genomic locus:	chr8:120647678-120736420
Size/Length:	88742 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_006209
Gene Symbol:	ENPP2
Chromosome:	chr8
TSS:	120569316 (Transcription start site)
TES:	120651106 (Transcription end site)
Strand:	-
Number of Exons:	26
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00519

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005785	SE_00519	chr8	120647678	120654613	6935	3003.17
C005786	SE_00519	chr8	120662414	120664080	1666	223.04
C005787	SE_00519	chr8	120666653	120669055	2402	521.4
C005788	SE_00519	chr8	120678692	120680308	1616	232.5
C005789	SE_00519	chr8	120682926	120687205	4279	2736.78
C005790	SE_00519	chr8	120689235	120691461	2226	988.5
C005791	SE_00519	chr8	120695618	120697868	2250	117.07
C005792	SE_00519	chr8	120705949	120708331	2382	310.18
C005793	SE_00519	chr8	120709475	120711778	2303	681.5
C005794	SE_00519	chr8	120712275	120714510	2235	316.68
C005795	SE_00519	chr8	120718880	120721127	2247	390.9
C005796	SE_00519	chr8	120731004	120736420	5416	1693.91