Super Enhancer Details

General details

Super-Enhancer ID:	SE_00521
Genomic locus:	chr7:132059773-132118121
Size/Length:	58348 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_017812
Gene Symbol:	CHCHD3
Chromosome:	chr7
TSS:	132469622 (Transcription start site)
TES:	132766828 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr7:132059773-132118121
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00521

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005547	SE_00521	chr7	132059773	132066197	6424	1684.12
C005548	SE_00521	chr7	132077590	132079798	2208	272.3
C005549	SE_00521	chr7	132084350	132090088	5738	3193.42
C005550	SE_00521	chr7	132091781	132093284	1503	94.4
C005551	SE_00521	chr7	132094344	132095865	1521	131.61
C005552	SE_00521	chr7	132099089	132100463	1374	122.04
C005553	SE_00521	chr7	132103136	132113966	10830	2744.46
C005554	SE_00521	chr7	132114174	132118121	3947	2145.11