Super Enhancer Details

General details

Super-Enhancer ID:	SE_00524
Genomic locus:	chr18:60774123-60847343
Size/Length:	73220 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000633
Gene Symbol:	BCL2
Chromosome:	chr18
TSS:	60790578 (Transcription start site)
TES:	60986613 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00524

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002863	SE_00524	chr18	60774123	60775205	1082	102.75
C002864	SE_00524	chr18	60786085	60790588	4503	1308.2
C002865	SE_00524	chr18	60790937	60800236	9299	2047.79
C002866	SE_00524	chr18	60805177	60806870	1693	156.09
C002867	SE_00524	chr18	60808439	60817265	8826	1492.45
C002868	SE_00524	chr18	60818838	60820388	1550	127.73
C002869	SE_00524	chr18	60821777	60824438	2661	410.23
C002870	SE_00524	chr18	60824636	60825852	1216	115.68
C002871	SE_00524	chr18	60827700	60831307	3607	926.07
C002872	SE_00524	chr18	60835697	60836767	1070	116.66
C002873	SE_00524	chr18	60839899	60841322	1423	106.78
C002874	SE_00524	chr18	60841999	60847343	5344	1869.1