Super Enhancer Details

General details

Super-Enhancer ID:	SE_00525
Genomic locus:	chr3:65904318-65966032
Size/Length:	61714 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004742
Gene Symbol:	MAGI1
Chromosome:	chr3
TSS:	65339905 (Transcription start site)
TES:	66024509 (Transcription end site)
Strand:	-
Number of Exons:	23
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00525

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004157	SE_00525	chr3	65904318	65906488	2170	404.75
C004158	SE_00525	chr3	65909431	65911634	2203	479.9
C004159	SE_00525	chr3	65919883	65942358	22475	1819.63
C004160	SE_00525	chr3	65943885	65945276	1391	133.21
C004161	SE_00525	chr3	65945407	65948231	2824	523.87
C004162	SE_00525	chr3	65949132	65950968	1836	126.55
C004163	SE_00525	chr3	65963364	65966032	2668	327.93