Super Enhancer Details

General details

Super-Enhancer ID:	SE_00527
Genomic locus:	chr1:27854885-27931302
Size/Length:	76417 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001029882
Gene Symbol:	AHDC1
Chromosome:	chr1
TSS:	27860755 (Transcription start site)
TES:	27930005 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00527

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000111	SE_00527	chr1	27854885	27856605	1720	255.25
C000112	SE_00527	chr1	27863080	27864417	1337	138.88
C000113	SE_00527	chr1	27868227	27874004	5777	3100
C000114	SE_00527	chr1	27880424	27884851	4427	867.34
C000115	SE_00527	chr1	27889462	27891915	2453	491.02
C000116	SE_00527	chr1	27894155	27902277	8122	458.01
C000117	SE_00527	chr1	27902382	27904230	1848	310.19
C000118	SE_00527	chr1	27915162	27918007	2845	409.42
C000119	SE_00527	chr1	27924540	27931302	6762	2296.14