Super Enhancer Details

General details

Super-Enhancer ID:	SE_00528
Genomic locus:	chr3:120131754-120171415
Size/Length:	39661 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_007085
Gene Symbol:	FSTL1
Chromosome:	chr3
TSS:	120113060 (Transcription start site)
TES:	120169918 (Transcription end site)
Strand:	-
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00528

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004256	SE_00528	chr3	120131754	120132687	933	93.11
C004257	SE_00528	chr3	120135662	120141167	5505	1097.43
C004258	SE_00528	chr3	120141471	120147556	6085	3100
C004259	SE_00528	chr3	120147673	120149470	1797	215.73
C004260	SE_00528	chr3	120150220	120152247	2027	215.71
C004261	SE_00528	chr3	120152828	120161713	8885	1742.92
C004262	SE_00528	chr3	120162026	120171415	9389	3100