Super Enhancer Details

General details

Super-Enhancer ID:	SE_00539
Genomic locus:	chr19:13250212-13283933
Size/Length:	33721 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004907
Gene Symbol:	IER2
Chromosome:	chr19
TSS:	13261281 (Transcription start site)
TES:	13265718 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:13250212-13283933
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00539

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002984	SE_00539	chr19	13250212	13252207	1995	434.14
C002985	SE_00539	chr19	13260131	13268654	8523	3100
C002986	SE_00539	chr19	13272838	13277005	4167	3100
C002987	SE_00539	chr19	13277207	13279843	2636	975
C002988	SE_00539	chr19	13280339	13281592	1253	110.25
C002989	SE_00539	chr19	13282666	13283933	1267	180.93