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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00541
Genomic locus: chr2:39694230-39758619
Size/Length: 64389 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_003618
Gene Symbol: MAP4K3
Chromosome: chr2
TSS: 39476406 (Transcription start site)
TES: 39664453 (Transcription end site)
Strand: -
Number of Exons: 34
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00541

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003160 SE_00541 chr2 39694230 39699209 4979 2160.04
C003161 SE_00541 chr2 39710624 39712782 2158 262.1
C003162 SE_00541 chr2 39718471 39720659 2188 365.72
C003163 SE_00541 chr2 39723965 39725263 1298 335.81
C003164 SE_00541 chr2 39730910 39746224 15314 2983.77
C003165 SE_00541 chr2 39751035 39752534 1499 135.35
C003166 SE_00541 chr2 39757062 39758619 1557 107.38