Super Enhancer Details

General details

Super-Enhancer ID:	SE_00541
Genomic locus:	chr2:39694230-39758619
Size/Length:	64389 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003618
Gene Symbol:	MAP4K3
Chromosome:	chr2
TSS:	39476406 (Transcription start site)
TES:	39664453 (Transcription end site)
Strand:	-
Number of Exons:	34
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00541

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003160	SE_00541	chr2	39694230	39699209	4979	2160.04
C003161	SE_00541	chr2	39710624	39712782	2158	262.1
C003162	SE_00541	chr2	39718471	39720659	2188	365.72
C003163	SE_00541	chr2	39723965	39725263	1298	335.81
C003164	SE_00541	chr2	39730910	39746224	15314	2983.77
C003165	SE_00541	chr2	39751035	39752534	1499	135.35
C003166	SE_00541	chr2	39757062	39758619	1557	107.38