Super Enhancer Details

General details

Super-Enhancer ID:	SE_00542
Genomic locus:	chr9:130589820-130631089
Size/Length:	41269 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000118
Gene Symbol:	ENG
Chromosome:	chr9
TSS:	130577290 (Transcription start site)
TES:	130617052 (Transcription end site)
Strand:	-
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00542

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006051	SE_00542	chr9	130589820	130592588	2768	574.39
C006052	SE_00542	chr9	130594476	130596643	2167	287.79
C006053	SE_00542	chr9	130597280	130604719	7439	3100
C006054	SE_00542	chr9	130604761	130606027	1266	133.79
C006055	SE_00542	chr9	130606698	130622213	15515	2985.19
C006056	SE_00542	chr9	130622250	130625698	3448	783.23
C006057	SE_00542	chr9	130629193	130631089	1896	340.6