Super Enhancer Details

General details

Super-Enhancer ID:	SE_00546
Genomic locus:	chr20:30279395-30312254
Size/Length:	32859 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001191
Gene Symbol:	BCL2L1
Chromosome:	chr20
TSS:	30252260 (Transcription start site)
TES:	30310656 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr20:30279395-30312254
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00546

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003660	SE_00546	chr20	30279395	30280429	1034	141.09
C003661	SE_00546	chr20	30281696	30285303	3607	849.1
C003662	SE_00546	chr20	30285914	30290417	4503	1610.42
C003663	SE_00546	chr20	30292383	30293830	1447	158.98
C003664	SE_00546	chr20	30293974	30296822	2848	353.33
C003665	SE_00546	chr20	30297989	30306428	8439	3100
C003666	SE_00546	chr20	30306461	30312254	5793	3100