Super Enhancer Details

General details

Super-Enhancer ID:	SE_00552
Genomic locus:	chr15:74272874-74305861
Size/Length:	32987 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_033238
Gene Symbol:	PML
Chromosome:	chr15
TSS:	74287013 (Transcription start site)
TES:	74335717 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:74272874-74305861
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00552

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002340	SE_00552	chr15	74272874	74285893	13019	2749.81
C002341	SE_00552	chr15	74285964	74290810	4846	2573.66
C002342	SE_00552	chr15	74298664	74302652	3988	822.12
C002343	SE_00552	chr15	74302681	74305861	3180	1137.86