Super Enhancer Details

General details

Super-Enhancer ID:	SE_00553
Genomic locus:	chr2:43519998-43578973
Size/Length:	58975 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_027251
Gene Symbol:	LINC01126
Chromosome:	chr2
TSS:	43454349 (Transcription start site)
TES:	43455994 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00553

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003201	SE_00553	chr2	43519998	43522186	2188	176.82
C003202	SE_00553	chr2	43530859	43533500	2641	550.9
C003203	SE_00553	chr2	43537340	43542400	5060	1603.5
C003204	SE_00553	chr2	43550230	43553529	3299	1446.98
C003205	SE_00553	chr2	43556698	43562699	6001	1957.26
C003206	SE_00553	chr2	43563601	43565104	1503	173.8
C003207	SE_00553	chr2	43566528	43568990	2462	779.83
C003208	SE_00553	chr2	43569969	43578973	9004	3107.03