Super Enhancer Details

General details

Super-Enhancer ID:	SE_00554
Genomic locus:	chr3:71073375-71118915
Size/Length:	45540 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_032682
Gene Symbol:	FOXP1
Chromosome:	chr3
TSS:	71247033 (Transcription start site)
TES:	71633140 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00554

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004183	SE_00554	chr3	71073375	71076287	2912	476.88
C004184	SE_00554	chr3	71080348	71082749	2401	380.26
C004185	SE_00554	chr3	71094448	71099987	5539	887.04
C004186	SE_00554	chr3	71100334	71102503	2169	149.29
C004187	SE_00554	chr3	71103632	71116555	12923	3100
C004188	SE_00554	chr3	71117215	71118915	1700	251.89