Super Enhancer Details

General details

Super-Enhancer ID:	SE_00557
Genomic locus:	chr10:33217662-33254333
Size/Length:	36671 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_133376
Gene Symbol:	ITGB1
Chromosome:	chr10
TSS:	33189245 (Transcription start site)
TES:	33247293 (Transcription end site)
Strand:	-
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:33217662-33254333
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00557

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000835	SE_00557	chr10	33217662	33219217	1555	274.23
C000836	SE_00557	chr10	33219724	33221179	1455	119.12
C000837	SE_00557	chr10	33225204	33228958	3754	1074.66
C000838	SE_00557	chr10	33229184	33231508	2324	203.6
C000839	SE_00557	chr10	33231920	33234165	2245	472.45
C000840	SE_00557	chr10	33236486	33238253	1767	138.63
C000841	SE_00557	chr10	33238280	33249618	11338	3100
C000842	SE_00557	chr10	33249663	33254333	4670	751.83