Super Enhancer Details

General details

Super-Enhancer ID:	SE_00559
Genomic locus:	chr15:66678129-66724316
Size/Length:	46187 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002755
Gene Symbol:	MAP2K1
Chromosome:	chr15
TSS:	66679210 (Transcription start site)
TES:	66783882 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:66678129-66724316
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00559

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002305	SE_00559	chr15	66678129	66681639	3510	2118.33
C002306	SE_00559	chr15	66692010	66704214	12204	3100
C002307	SE_00559	chr15	66705270	66711418	6148	1642.58
C002308	SE_00559	chr15	66713831	66715874	2043	190.35
C002309	SE_00559	chr15	66718282	66719701	1419	169.62
C002310	SE_00559	chr15	66719919	66724316	4397	1563.89