Super Enhancer Details

General details

Super-Enhancer ID:	SE_00560
Genomic locus:	chr4:114353770-114394902
Size/Length:	41132 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_172129
Gene Symbol:	CAMK2D
Chromosome:	chr4
TSS:	114372187 (Transcription start site)
TES:	114683083 (Transcription end site)
Strand:	-
Number of Exons:	19
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00560

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004546	SE_00560	chr4	114353770	114360234	6464	2240.34
C004547	SE_00560	chr4	114364530	114373126	8596	2716.4
C004548	SE_00560	chr4	114373354	114375549	2195	265.61
C004549	SE_00560	chr4	114387591	114394902	7311	3100