Super Enhancer Details

General details

Super-Enhancer ID:	SE_00561
Genomic locus:	chr6:3322436-3407814
Size/Length:	85378 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001069
Gene Symbol:	TUBB2A
Chromosome:	chr6
TSS:	3153900 (Transcription start site)
TES:	3157783 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:3322436-3407814
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00561

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005000	SE_00561	chr6	3322436	3326705	4269	1007.5
C005001	SE_00561	chr6	3337350	3343190	5840	3100
C005002	SE_00561	chr6	3353437	3359773	6336	3100
C005003	SE_00561	chr6	3372242	3374095	1853	211.64
C005004	SE_00561	chr6	3385220	3387603	2383	392.23
C005005	SE_00561	chr6	3389350	3391184	1834	149.23
C005006	SE_00561	chr6	3402675	3404493	1818	357.96
C005007	SE_00561	chr6	3405188	3407814	2626	974.59