Super Enhancer Details

General details

Super-Enhancer ID:	SE_00563
Genomic locus:	chr1:9337903-9405834
Size/Length:	67931 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_025106
Gene Symbol:	SPSB1
Chromosome:	chr1
TSS:	9352940 (Transcription start site)
TES:	9429590 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:9337903-9405834
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00563

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000016	SE_00563	chr1	9337903	9340328	2425	296.67
C000017	SE_00563	chr1	9348992	9359362	10370	3100
C000018	SE_00563	chr1	9361755	9364768	3013	845.67
C000019	SE_00563	chr1	9373780	9376754	2974	399.37
C000020	SE_00563	chr1	9377257	9378966	1709	235.44
C000021	SE_00563	chr1	9383751	9389485	5734	1250.27
C000022	SE_00563	chr1	9398014	9401867	3853	529.4
C000023	SE_00563	chr1	9403792	9405834	2042	262.23