Super Enhancer Details

General details

Super-Enhancer ID:	SE_00564
Genomic locus:	chr14:52444231-52527650
Size/Length:	83419 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_016039
Gene Symbol:	C14orf166
Chromosome:	chr14
TSS:	52456227 (Transcription start site)
TES:	52471420 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00564

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001961	SE_00564	chr14	52444231	52446352	2121	432.34
C001962	SE_00564	chr14	52455249	52458466	3217	1350.64
C001963	SE_00564	chr14	52468398	52470432	2034	128.86
C001964	SE_00564	chr14	52476781	52482117	5336	1236
C001965	SE_00564	chr14	52483141	52490093	6952	833.16
C001966	SE_00564	chr14	52490104	52493526	3422	338.43
C001967	SE_00564	chr14	52497394	52500968	3574	782.36
C001968	SE_00564	chr14	52509268	52513214	3946	507.59
C001969	SE_00564	chr14	52514545	52522864	8319	1742.61
C001970	SE_00564	chr14	52524933	52527650	2717	323.79