Super Enhancer Details

General details

Super-Enhancer ID:	SE_00565
Genomic locus:	chr14:35834126-35876369
Size/Length:	42243 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_020529
Gene Symbol:	NFKBIA
Chromosome:	chr14
TSS:	35870715 (Transcription start site)
TES:	35873960 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr14:35834126-35876369
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00565

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001943	SE_00565	chr14	35834126	35836117	1991	418.77
C001944	SE_00565	chr14	35836857	35838165	1308	105.09
C001945	SE_00565	chr14	35843272	35844215	943	118.07
C001946	SE_00565	chr14	35852740	35855391	2651	718.79
C001947	SE_00565	chr14	35866191	35876369	10178	3100