Super Enhancer Details

General details

Super-Enhancer ID:	SE_00569
Genomic locus:	chr1:206806221-206899023
Size/Length:	92802 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001004023
Gene Symbol:	DYRK3
Chromosome:	chr1
TSS:	206808880 (Transcription start site)
TES:	206822542 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00569

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000620	SE_00569	chr1	206806221	206811516	5295	1987.59
C000621	SE_00569	chr1	206821515	206829622	8107	1593.36
C000622	SE_00569	chr1	206830888	206833299	2411	474.43
C000623	SE_00569	chr1	206845430	206847366	1936	154.88
C000624	SE_00569	chr1	206858455	206861444	2989	2675.37
C000625	SE_00569	chr1	206864745	206868305	3560	847.27
C000626	SE_00569	chr1	206875932	206876957	1025	90.09
C000627	SE_00569	chr1	206877533	206881955	4422	867.05
C000628	SE_00569	chr1	206889296	206891921	2625	242.91
C000629	SE_00569	chr1	206896263	206899023	2760	1646.85