Super Enhancer Details

General details

Super-Enhancer ID:	SE_00573
Genomic locus:	chr18:52967868-53020076
Size/Length:	52208 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003199
Gene Symbol:	TCF4
Chromosome:	chr18
TSS:	52889561 (Transcription start site)
TES:	53253350 (Transcription end site)
Strand:	-
Number of Exons:	19
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00573

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002857	SE_00573	chr18	52967868	52970372	2504	292.82
C002858	SE_00573	chr18	52981752	52992259	10507	3100
C002859	SE_00573	chr18	52993116	52997423	4307	1217.41
C002860	SE_00573	chr18	52997869	52999803	1934	232.14
C002861	SE_00573	chr18	53003879	53008324	4445	1332.58
C002862	SE_00573	chr18	53017981	53020076	2095	156.39