Super Enhancer Details

General details

Super-Enhancer ID:	SE_00575
Genomic locus:	chr6:7194424-7262547
Size/Length:	68123 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003144
Gene Symbol:	SSR1
Chromosome:	chr6
TSS:	7281375 (Transcription start site)
TES:	7313547 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00575

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005048	SE_00575	chr6	7194424	7200151	5727	1101.36
C005049	SE_00575	chr6	7200514	7204016	3502	538.47
C005050	SE_00575	chr6	7204408	7206453	2045	191.17
C005051	SE_00575	chr6	7207500	7209257	1757	196.45
C005052	SE_00575	chr6	7209819	7211232	1413	120.61
C005053	SE_00575	chr6	7214342	7219533	5191	3164.38
C005054	SE_00575	chr6	7219560	7223349	3789	909.5
C005055	SE_00575	chr6	7224452	7225483	1031	95.56
C005056	SE_00575	chr6	7234517	7240621	6104	1628.4
C005057	SE_00575	chr6	7240654	7244552	3898	1371.83
C005058	SE_00575	chr6	7254539	7255845	1306	106.92
C005059	SE_00575	chr6	7260557	7262547	1990	304.41