Super Enhancer Details

General details

Super-Enhancer ID:	SE_00578
Genomic locus:	chr14:93529386-93602506
Size/Length:	73120 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001142594
Gene Symbol:	ITPK1
Chromosome:	chr14
TSS:	93406067 (Transcription start site)
TES:	93582263 (Transcription end site)
Strand:	-
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00578

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002114	SE_00578	chr14	93529386	93532610	3224	241.81
C002115	SE_00578	chr14	93539221	93542424	3203	951.62
C002116	SE_00578	chr14	93544020	93547104	3084	1175.83
C002117	SE_00578	chr14	93547224	93550432	3208	1641.62
C002118	SE_00578	chr14	93556565	93558794	2229	380.37
C002119	SE_00578	chr14	93562452	93564392	1940	282.52
C002120	SE_00578	chr14	93570720	93572087	1367	203.09
C002121	SE_00578	chr14	93578758	93583780	5022	2582.62
C002122	SE_00578	chr14	93586610	93588290	1680	460.67
C002123	SE_00578	chr14	93593898	93597248	3350	1448.6
C002124	SE_00578	chr14	93598501	93599918	1417	149.39
C002125	SE_00578	chr14	93600031	93601364	1333	126.74
C002126	SE_00578	chr14	93601400	93602506	1106	112.77