Super Enhancer Details

General details

Super-Enhancer ID:	SE_00582
Genomic locus:	chr11:34436866-34486153
Size/Length:	49287 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001752
Gene Symbol:	CAT
Chromosome:	chr11
TSS:	34460471 (Transcription start site)
TES:	34493607 (Transcription end site)
Strand:	+
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr11:34436866-34486153
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00582

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001190	SE_00582	chr11	34436866	34440531	3665	554.54
C001191	SE_00582	chr11	34442918	34445649	2731	1028.87
C001192	SE_00582	chr11	34446918	34450703	3785	1534.41
C001193	SE_00582	chr11	34458895	34466913	8018	3100
C001194	SE_00582	chr11	34467197	34468496	1299	121.54
C001195	SE_00582	chr11	34471303	34473840	2537	245.31
C001196	SE_00582	chr11	34474431	34478290	3859	698.05
C001197	SE_00582	chr11	34479070	34483069	3999	491.2
C001198	SE_00582	chr11	34484016	34486153	2137	139.72