Super Enhancer Details

General details

Super-Enhancer ID:	SE_00583
Genomic locus:	chr20:10571514-10656617
Size/Length:	85103 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000214
Gene Symbol:	JAG1
Chromosome:	chr20
TSS:	10618331 (Transcription start site)
TES:	10654694 (Transcription end site)
Strand:	-
Number of Exons:	26
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00583

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003643	SE_00583	chr20	10571514	10573661	2147	170.94
C003644	SE_00583	chr20	10584115	10587046	2931	762.89
C003645	SE_00583	chr20	10589190	10591879	2689	418.97
C003646	SE_00583	chr20	10602407	10604629	2222	407.29
C003647	SE_00583	chr20	10615430	10619504	4074	450.74
C003648	SE_00583	chr20	10619930	10621874	1944	199.34
C003649	SE_00583	chr20	10628098	10630841	2743	351.26
C003650	SE_00583	chr20	10632913	10636908	3995	668.27
C003651	SE_00583	chr20	10645117	10648920	3803	633.89
C003652	SE_00583	chr20	10650197	10656617	6420	3100