Super Enhancer Details

General details

Super-Enhancer ID:	SE_00585
Genomic locus:	chr8:11686085-11736615
Size/Length:	50530 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001908
Gene Symbol:	CTSB
Chromosome:	chr8
TSS:	11700033 (Transcription start site)
TES:	11725646 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr8:11686085-11736615
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00585

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005591	SE_00585	chr8	11686085	11689496	3411	510.98
C005592	SE_00585	chr8	11689956	11694884	4928	1135.36
C005593	SE_00585	chr8	11697144	11700199	3055	1474.85
C005594	SE_00585	chr8	11700775	11704285	3510	584.82
C005595	SE_00585	chr8	11705490	11707663	2173	419.77
C005596	SE_00585	chr8	11709483	11712849	3366	3143.26
C005597	SE_00585	chr8	11714157	11716075	1918	307.34
C005598	SE_00585	chr8	11718471	11726772	8301	2884.65
C005599	SE_00585	chr8	11734281	11736615	2334	187.99