Super Enhancer Details

General details

Super-Enhancer ID:	SE_00591
Genomic locus:	chr15:48893707-48965905
Size/Length:	72198 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000138
Gene Symbol:	FBN1
Chromosome:	chr15
TSS:	48700502 (Transcription start site)
TES:	48937985 (Transcription end site)
Strand:	-
Number of Exons:	66
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:48893707-48965905
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00591

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002180	SE_00591	chr15	48893707	48897458	3751	403.7
C002181	SE_00591	chr15	48899959	48901374	1415	107.21
C002182	SE_00591	chr15	48904746	48910729	5983	756.98
C002183	SE_00591	chr15	48919022	48920916	1894	248.31
C002184	SE_00591	chr15	48921722	48926611	4889	700.59
C002185	SE_00591	chr15	48927718	48930528	2810	230.53
C002186	SE_00591	chr15	48932791	48941042	8251	3100
C002187	SE_00591	chr15	48944626	48948221	3595	375.55
C002188	SE_00591	chr15	48959495	48961010	1515	324.75
C002189	SE_00591	chr15	48962380	48965905	3525	613.05