Super Enhancer Details

General details

Super-Enhancer ID:	SE_00592
Genomic locus:	chr7:76210216-76257971
Size/Length:	47755 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_012230
Gene Symbol:	POMZP3
Chromosome:	chr7
TSS:	76239302 (Transcription start site)
TES:	76256620 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00592

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005398	SE_00592	chr7	76210216	76215897	5681	3100
C005399	SE_00592	chr7	76227773	76230747	2974	913.09
C005400	SE_00592	chr7	76234056	76240067	6011	3013.01
C005401	SE_00592	chr7	76240232	76243832	3600	901.12
C005402	SE_00592	chr7	76254140	76257971	3831	2901.24