Super Enhancer Details

General details

Super-Enhancer ID:	SE_00593
Genomic locus:	chr16:48387083-48429049
Size/Length:	41966 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001006610
Gene Symbol:	SIAH1
Chromosome:	chr16
TSS:	48394453 (Transcription start site)
TES:	48419229 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr16:48387083-48429049
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00593

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002495	SE_00593	chr16	48387083	48387973	890	93.22
C002496	SE_00593	chr16	48388061	48392446	4385	628.14
C002497	SE_00593	chr16	48395283	48397041	1758	215.52
C002498	SE_00593	chr16	48397942	48402042	4100	3100
C002499	SE_00593	chr16	48405064	48408450	3386	369.23
C002500	SE_00593	chr16	48410441	48411773	1332	127.02
C002501	SE_00593	chr16	48412161	48414376	2215	215.32
C002502	SE_00593	chr16	48414958	48420418	5460	3100
C002503	SE_00593	chr16	48426641	48429049	2408	1195.51