Super Enhancer Details

General details

Super-Enhancer ID:	SE_00595
Genomic locus:	chr4:89626628-89687735
Size/Length:	61107 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001015045
Gene Symbol:	FAM13A
Chromosome:	chr4
TSS:	89647104 (Transcription start site)
TES:	89744512 (Transcription end site)
Strand:	-
Number of Exons:	18
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00595

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004522	SE_00595	chr4	89626628	89628743	2115	373.15
C004523	SE_00595	chr4	89641022	89652036	11014	2159.61
C004524	SE_00595	chr4	89654116	89660309	6193	2199.54
C004525	SE_00595	chr4	89660992	89662155	1163	107.05
C004526	SE_00595	chr4	89664003	89668809	4806	1398.47
C004527	SE_00595	chr4	89672938	89682117	9179	1923.11
C004528	SE_00595	chr4	89684506	89685501	995	95.77
C004529	SE_00595	chr4	89686085	89687735	1650	179.09