Super Enhancer Details

General details

Super-Enhancer ID:	SE_00596
Genomic locus:	chr5:32097089-32175815
Size/Length:	78726 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_022130
Gene Symbol:	GOLPH3
Chromosome:	chr5
TSS:	32124823 (Transcription start site)
TES:	32174425 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00596

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004675	SE_00596	chr5	32097089	32101154	4065	494.93
C004676	SE_00596	chr5	32107985	32111806	3821	775.46
C004677	SE_00596	chr5	32115592	32117023	1431	90.42
C004678	SE_00596	chr5	32125431	32127200	1769	196.74
C004679	SE_00596	chr5	32128796	32131576	2780	332.81
C004680	SE_00596	chr5	32131902	32134201	2299	348.09
C004681	SE_00596	chr5	32143527	32147515	3988	274.69
C004682	SE_00596	chr5	32153274	32155156	1882	201.15
C004683	SE_00596	chr5	32163470	32164965	1495	200.31
C004684	SE_00596	chr5	32165338	32166700	1362	166.29
C004685	SE_00596	chr5	32167340	32175815	8475	3100