Super Enhancer Details

General details

Super-Enhancer ID:	SE_00597
Genomic locus:	chr1:110319559-110372667
Size/Length:	53108 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_172210
Gene Symbol:	CSF1
Chromosome:	chr1
TSS:	110453232 (Transcription start site)
TES:	110469365 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00597

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000358	SE_00597	chr1	110319559	110320507	948	101.83
C000359	SE_00597	chr1	110324351	110330372	6021	2050.35
C000360	SE_00597	chr1	110332514	110337716	5202	1473.8
C000361	SE_00597	chr1	110344882	110347261	2379	778.12
C000362	SE_00597	chr1	110348432	110350871	2439	533.39
C000363	SE_00597	chr1	110355856	110360323	4467	1157.46
C000364	SE_00597	chr1	110363455	110372667	9212	3100