Super Enhancer Details

General details

Super-Enhancer ID:	SE_00599
Genomic locus:	chr9:12772303-12820220
Size/Length:	47917 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_203403
Gene Symbol:	LURAP1L
Chromosome:	chr9
TSS:	12775011 (Transcription start site)
TES:	12823059 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:12772303-12820220
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00599

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005854	SE_00599	chr9	12772303	12779118	6815	3100
C005855	SE_00599	chr9	12783563	12787143	3580	1680.08
C005856	SE_00599	chr9	12789034	12792099	3065	549.44
C005857	SE_00599	chr9	12794072	12795974	1902	106.65
C005858	SE_00599	chr9	12796446	12798033	1587	118.67
C005859	SE_00599	chr9	12809133	12811221	2088	309.61
C005860	SE_00599	chr9	12812014	12820220	8206	3102.79