Super Enhancer Details

General details

Super-Enhancer ID:	SE_00600
Genomic locus:	chr9:134483138-134555740
Size/Length:	72602 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_198679
Gene Symbol:	RAPGEF1
Chromosome:	chr9
TSS:	134452156 (Transcription start site)
TES:	134615331 (Transcription end site)
Strand:	-
Number of Exons:	24
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:134483138-134555740
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00600

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006084	SE_00600	chr9	134483138	134486996	3858	985.54
C006085	SE_00600	chr9	134492441	134493782	1341	120.27
C006086	SE_00600	chr9	134502546	134504959	2413	587.54
C006087	SE_00600	chr9	134509807	134512621	2814	996.2
C006088	SE_00600	chr9	134515782	134518409	2627	916.78
C006089	SE_00600	chr9	134524622	134527590	2968	383.3
C006090	SE_00600	chr9	134529636	134532962	3326	666.95
C006091	SE_00600	chr9	134533009	134534664	1655	307.56
C006092	SE_00600	chr9	134542539	134547112	4573	755.79
C006093	SE_00600	chr9	134547706	134555740	8034	3157.93