Super Enhancer Details

General details

Super-Enhancer ID:	SE_00601
Genomic locus:	chr21:39830852-39877989
Size/Length:	47137 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_182918
Gene Symbol:	ERG
Chromosome:	chr21
TSS:	39751949 (Transcription start site)
TES:	39870428 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr21:39830852-39877989
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00601

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003807	SE_00601	chr21	39830852	39833877	3025	405.67
C003808	SE_00601	chr21	39842218	39854722	12504	2382.89
C003809	SE_00601	chr21	39855613	39857095	1482	174.7
C003810	SE_00601	chr21	39858106	39873160	15054	2274.02
C003811	SE_00601	chr21	39874905	39877989	3084	269.44