Super Enhancer Details

General details

Super-Enhancer ID:	SE_00602
Genomic locus:	chr15:86288168-86325129
Size/Length:	36961 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_031682
Gene Symbol:	MIR1276
Chromosome:	chr15
TSS:	86313726 (Transcription start site)
TES:	86313809 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00602

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002412	SE_00602	chr15	86288168	86291387	3219	600.27
C002413	SE_00602	chr15	86291459	86296560	5101	2412.47
C002414	SE_00602	chr15	86297375	86302892	5517	1111.78
C002415	SE_00602	chr15	86305226	86306610	1384	146.58
C002416	SE_00602	chr15	86307656	86309936	2280	130
C002417	SE_00602	chr15	86312690	86317573	4883	1706.21
C002418	SE_00602	chr15	86319568	86325129	5561	3100