Super Enhancer Details

General details

Super-Enhancer ID:	SE_00603
Genomic locus:	chr1:110407003-110477170
Size/Length:	70167 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_172210
Gene Symbol:	CSF1
Chromosome:	chr1
TSS:	110453232 (Transcription start site)
TES:	110469365 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:110407003-110477170
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00603

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000365	SE_00603	chr1	110407003	110408630	1627	116.6
C000366	SE_00603	chr1	110414423	110416639	2216	136.41
C000367	SE_00603	chr1	110418710	110422532	3822	1720.73
C000368	SE_00603	chr1	110425063	110427711	2648	1131.04
C000369	SE_00603	chr1	110434140	110436472	2332	295.52
C000370	SE_00603	chr1	110438162	110439850	1688	299.8
C000371	SE_00603	chr1	110451593	110458290	6697	3112.63
C000372	SE_00603	chr1	110459284	110461346	2062	159.58
C000373	SE_00603	chr1	110465203	110466765	1562	185.27
C000374	SE_00603	chr1	110467604	110475254	7650	3100
C000375	SE_00603	chr1	110476166	110477170	1004	105.9