Super Enhancer Details

General details

Super-Enhancer ID:	SE_00607
Genomic locus:	chr5:43619214-43665352
Size/Length:	46138 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_182977
Gene Symbol:	NNT
Chromosome:	chr5
TSS:	43603228 (Transcription start site)
TES:	43705668 (Transcription end site)
Strand:	+
Number of Exons:	22
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00607

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004721	SE_00607	chr5	43619214	43621512	2298	298.25
C004722	SE_00607	chr5	43627063	43629092	2029	239.94
C004723	SE_00607	chr5	43630519	43632878	2359	173.16
C004724	SE_00607	chr5	43632982	43644992	12010	3100
C004725	SE_00607	chr5	43646846	43650927	4081	1132.93
C004726	SE_00607	chr5	43656346	43661501	5155	1410.53
C004727	SE_00607	chr5	43661816	43662844	1028	102.06
C004728	SE_00607	chr5	43663068	43665352	2284	264.49