Super Enhancer Details

General details

Super-Enhancer ID:	SE_00613
Genomic locus:	chr6:157095155-157131028
Size/Length:	35873 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_020732
Gene Symbol:	ARID1B
Chromosome:	chr6
TSS:	157099063 (Transcription start site)
TES:	157531913 (Transcription end site)
Strand:	+
Number of Exons:	19
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00613

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005289	SE_00613	chr6	157095155	157106794	11639	3100
C005290	SE_00613	chr6	157109758	157115653	5895	1407.82
C005291	SE_00613	chr6	157116101	157117637	1536	223.05
C005292	SE_00613	chr6	157122297	157123599	1302	111.55
C005293	SE_00613	chr6	157128722	157131028	2306	160.82