Super Enhancer Details

General details

Super-Enhancer ID:	SE_00615
Genomic locus:	chr12:109870319-109908792
Size/Length:	38473 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_031954
Gene Symbol:	KCTD10
Chromosome:	chr12
TSS:	109886459 (Transcription start site)
TES:	109915155 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00615

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001759	SE_00615	chr12	109870319	109873182	2863	354.9
C001760	SE_00615	chr12	109875963	109879960	3997	843.92
C001761	SE_00615	chr12	109881459	109884507	3048	978.4
C001762	SE_00615	chr12	109885324	109887512	2188	187.68
C001763	SE_00615	chr12	109895779	109906435	10656	3100
C001764	SE_00615	chr12	109907170	109908792	1622	97