Super Enhancer Details

General details

Super-Enhancer ID:	SE_00616
Genomic locus:	chr1:43995107-44044138
Size/Length:	49031 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002840
Gene Symbol:	PTPRF
Chromosome:	chr1
TSS:	43996546 (Transcription start site)
TES:	44089343 (Transcription end site)
Strand:	+
Number of Exons:	33
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:43995107-44044138
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00616

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000171	SE_00616	chr1	43995107	43998898	3791	1089.06
C000172	SE_00616	chr1	43998907	44001249	2342	174.07
C000173	SE_00616	chr1	44005080	44009253	4173	888.83
C000174	SE_00616	chr1	44009256	44025211	15955	1753.58
C000175	SE_00616	chr1	44028518	44030367	1849	302.61
C000176	SE_00616	chr1	44031018	44034110	3092	535.39
C000177	SE_00616	chr1	44036802	44039405	2603	322.33
C000178	SE_00616	chr1	44039979	44041590	1611	192.83
C000179	SE_00616	chr1	44043140	44044138	998	92.72