Super Enhancer Details

General details

Super-Enhancer ID:	SE_00617
Genomic locus:	chr11:85861127-85914400
Size/Length:	53273 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_152991
Gene Symbol:	EED
Chromosome:	chr11
TSS:	85955425 (Transcription start site)
TES:	85989852 (Transcription end site)
Strand:	+
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00617

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001353	SE_00617	chr11	85861127	85865650	4523	1901.25
C001354	SE_00617	chr11	85866397	85868452	2055	473.25
C001355	SE_00617	chr11	85871504	85876656	5152	2112.24
C001356	SE_00617	chr11	85877609	85879774	2165	366.14
C001357	SE_00617	chr11	85883002	85890785	7783	3100
C001358	SE_00617	chr11	85895037	85898936	3899	700.64
C001359	SE_00617	chr11	85903145	85905839	2694	690.95
C001360	SE_00617	chr11	85912790	85914400	1610	263.51