Super Enhancer Details

General details

Super-Enhancer ID:	SE_00626
Genomic locus:	chr15:31616898-31666147
Size/Length:	49249 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_017762
Gene Symbol:	MTMR10
Chromosome:	chr15
TSS:	31231143 (Transcription start site)
TES:	31283807 (Transcription end site)
Strand:	-
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00626

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002136	SE_00626	chr15	31616898	31623156	6258	2752.4
C002137	SE_00626	chr15	31625972	31627753	1781	226.29
C002138	SE_00626	chr15	31627756	31628724	968	121.82
C002139	SE_00626	chr15	31629891	31632987	3096	1094.4
C002140	SE_00626	chr15	31633827	31635841	2014	279.72
C002141	SE_00626	chr15	31635918	31638754	2836	454.18
C002142	SE_00626	chr15	31644000	31647950	3950	1972.67
C002143	SE_00626	chr15	31652991	31655038	2047	340.29
C002144	SE_00626	chr15	31656090	31666147	10057	1346.98