Super Enhancer Details

General details

Super-Enhancer ID:	SE_00628
Genomic locus:	chr9:134267850-134317828
Size/Length:	49978 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_032728
Gene Symbol:	PPAPDC3
Chromosome:	chr9
TSS:	134165080 (Transcription start site)
TES:	134184649 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00628

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006075	SE_00628	chr9	134267850	134269654	1804	743.71
C006076	SE_00628	chr9	134269768	134274508	4740	3100
C006077	SE_00628	chr9	134276959	134283640	6681	3100
C006078	SE_00628	chr9	134284625	134286311	1686	274.62
C006079	SE_00628	chr9	134292148	134295588	3440	901.99
C006080	SE_00628	chr9	134296074	134299166	3092	455.47
C006081	SE_00628	chr9	134301790	134303120	1330	103.1
C006082	SE_00628	chr9	134313761	134314866	1105	112.87
C006083	SE_00628	chr9	134315593	134317828	2235	306.88