Super Enhancer Details

General details

Super-Enhancer ID:	SE_00630
Genomic locus:	chr15:85523040-85592044
Size/Length:	69004 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_173454
Gene Symbol:	PDE8A
Chromosome:	chr15
TSS:	85525204 (Transcription start site)
TES:	85682372 (Transcription end site)
Strand:	+
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:85523040-85592044
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00630

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002392	SE_00630	chr15	85523040	85529442	6402	3100
C002393	SE_00630	chr15	85529478	85530772	1294	228.5
C002394	SE_00630	chr15	85531104	85533330	2226	178.29
C002395	SE_00630	chr15	85542684	85544931	2247	315.56
C002396	SE_00630	chr15	85548359	85551098	2739	183.62
C002397	SE_00630	chr15	85551136	85555066	3930	3100
C002398	SE_00630	chr15	85555783	85558143	2360	396.83
C002399	SE_00630	chr15	85569468	85571516	2048	604.9
C002400	SE_00630	chr15	85571849	85574496	2647	300.62
C002401	SE_00630	chr15	85574700	85576822	2122	208.72
C002402	SE_00630	chr15	85588052	85592044	3992	891.32