Super Enhancer Details

General details

Super-Enhancer ID:	SE_00631
Genomic locus:	chr2:206546261-206600180
Size/Length:	53919 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003872
Gene Symbol:	NRP2
Chromosome:	chr2
TSS:	206547223 (Transcription start site)
TES:	206641880 (Transcription end site)
Strand:	+
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00631

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003555	SE_00631	chr2	206546261	206552412	6151	3100
C003556	SE_00631	chr2	206552557	206554764	2207	141.77
C003557	SE_00631	chr2	206559009	206574561	15552	1875.55
C003558	SE_00631	chr2	206576218	206580568	4350	1081.68
C003559	SE_00631	chr2	206581497	206583484	1987	228.58
C003560	SE_00631	chr2	206594406	206598726	4320	349.61
C003561	SE_00631	chr2	206598973	206600180	1207	153.85