Super Enhancer Details

General details

Super-Enhancer ID:	SE_00633
Genomic locus:	chr6:3721843-3760833
Size/Length:	38990 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_183373
Gene Symbol:	PXDC1
Chromosome:	chr6
TSS:	3722835 (Transcription start site)
TES:	3752246 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:3721843-3760833
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00633

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005008	SE_00633	chr6	3721843	3723256	1413	130.98
C005009	SE_00633	chr6	3723642	3726541	2899	680.78
C005010	SE_00633	chr6	3738913	3741036	2123	277.25
C005011	SE_00633	chr6	3741133	3754390	13257	3100
C005012	SE_00633	chr6	3759077	3760833	1756	164.42